For a full list of publications, please see Google Scholar.

*   Indicates undergraduate intern

**  Indicates graduate student (when work was conducted)

†   Indicates post doctoral researcher (when work was conducted)

  1. Brigham BA**, Bird JA, Juhl AR, Zappa CJ, Montero AD**, O’Mullan GD. Anthropogenic inputs from a coastal megacity enhance greenhouse gas production in the surrounding estuary. Limnology and Oceanography (In press). doi: 10.1002/lno.11200.


  1. Bausch AR**, Juhl AR, Donaher NA, Cockshutt, AM (2019). Combined effects of simulated acidification and hypoxia on the harmful dinoflagellate Amphidinium carterae. Marine Biology 166: 80


  1. Campbell K**, Mundy CJ, Juhl AR, Dalman LA, Michel C, Galley RJ, Else BE, Geilfius NX, Rysgaard S (2019). Melt procedure affects the photosynthetic response of sea ice algae. Frontiers in Earth Science 7:21. doi: 10.3389/feart.2019.00021


  1. O’Mullan GD,Juhl AR, Reichert R**, Schneider E**, Martinez, N* (2019). Patterns of sediment-associated fecal indicator bacteria in an urban estuary: benthic-pelagic coupling and implications for shoreline water quality. Science of the Total Environment 656: 1168–1177. doi:10.1016/j.scitotenv.2018.11.405 
  1. Cantwell MG, Katz DR, SullivanJC, ShapleyD, LipscombJ, EpsteinJ, JuhlAR, KnudsonC, O’Mullan GD (2018). Spatial Patterns of Pharmaceuticals and Wastewater Tracers in the Hudson River Estuary. Water Research 137:335-343. doi:10.1016/j.watres.2017.12.044


  1. Anderson OR, Juhl AR, Bock N** (2018). The effects of organic carbon enrichment on respiration rates, phosphatase activities, and abundance of heterotrophic bacteria and protists in organic-rich arctic and mineral-rich temperate soil samples. Polar Biology 41:11-24. doi: 10.1007/s00300-017-2166-4


  1. Purcell JE, Juhl AR, Manko MK**, Aumack CF (2018). Overwintering of gelatinous zooplankton in the coastal Arctic Ocean. Marine Ecology Progress Series 591:281-286. doi: 10.3354/meps12289
  1. Hennon GMM, Hernández LimónMD*, Haley S, Juhl AR, Dyhrman ST (2017). Diverse CO2-induced responses in physiology and gene expression among eukaryotic phytoplankton. Frontiers in Microbiology 8:2547. doi: 10.3389/fmicb.2017.02547.


  1. Dueker ME**, O'Mullan GD, Martinez J, Juhl AR, Weathers KC (2017). Onshore wind speed modulates microbial aerosols along an urban waterfront. Atmosphere 8(11): 215. doi:10.3390/atmos8110215.


  1. Harke, MJ, Juhl AR, Haley ST, Alexander H**, Dyhrman ST (2017). Conserved transcriptional responses to nutrient stress in bloom-forming algae. Frontiers in Microbiology 8:1279. doi: 10.3389/fmicb.2017.01279.


  1. Haley ST, Alexander H**, Juhl AR, Dyhrman ST (2017). Transcriptional response of the harmful raphidophyte Heterosigma akashiwo to nitrate and phosphate limitation. Harmful Algae 68: 258-270, doi:10.1016/j.hal.2017.07.001.


  1. O’Mullan GD, Duecker ME, Juhl AR (2017). “Challenges to managing microbial fecal pollution in coastal environments: extra-enteric ecology and microbial exchange among water, sediment and air. Current Pollution Reports 1 (3): 1-16. doi: 10.1007/s40726-016-0047-z
  1. D’souza NA, Subramaniam A, Juhl AR, Hafez M, Chekalyuk A, Phan S*, Yan B, MacDonald I, Montoya J. (2016). Elevated surface chlorophyll associated with natural oil seeps in the Gulf of Mexico. Nature Geosciences 9: 215–218, doi:10.1038/ngeo2631.


  1. Aumack CF, Juhl AR (2015). Light and nutrient effects on the settling characteristics of the sea ice diatom, Nitzschia frigida. Limnology and Oceanography 60: 765–776.


  1. Juhl AR, Anderson OR (2014). Geographic variability in amoeboid protists and other microbial groups in the water column of the lower Hudson River Estuary. Estuarine and Coastal Shelf Science 151:45-53.


  1. Aumack CF, Juhl AR, Krembs C (2014). Diatom vertical migration within land-fast Arctic sea-ice. Journal of Marine Systems 139: 496-504.


  1. Keeling PJ, and 77 others including Juhl AR (2014). The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing. PLOS Biology 12(6) e101889


  1. Young S**, Juhl AR, O’Mullan GD (2013). Antibiotic resistant bacteria in the Hudson River Estuary linked to wet weather sewage contamination. Journal of Water and Heath 11: 297-310. doi: 10.2166/wh.2013.131


  1. Dueker ME**, O’Mullan GD, Juhl AR, Weathers KC, Uriarte M (2012). Local environmental pollution strongly influences culturable bacterial aerosols at an urban aquatic Superfund site. Environmental Science and Technology 46: 10926-10933. doi: 10.1021/es301870t


  1. Dueker ME**, O’Mullan GD, Weathers KC, Juhl AR, Uriarte M (2012). Coupling of fog and marine microbial content in the near- shore coastal environment. Biogeosciences 9:803-813


  1. Suter E*, Juhl AR, and O’Mullan GD (2011). Abundance and particle association of Enterococci and total bacteria in the lower Hudson River estuary, USA. Journal of Water Resource and Protection 3: 715-725. doi: 10.4236/jwarp.2011.310082


  1. Juhl AR, Krembs C, Meiners K (2011). Seasonal development and differential retention of ice algae and other organic fractions from Arctic sea ice.  Marine Ecology Progress Series 436:1-16


  1. Dueker ME**, Weathers KC, O’Mullan, GD, Juhl AR, Uriarte M (2011). Environmental controls on coastal coarse aerosols: implications for microbial content and deposition in the near-shore environment. Environmental Science and Technology 45:3386-3392


  1. Haley ST, Juhl AR, Keafer BA, Dyhrman, ST, Anderson DM (2011). Detecting copepod grazing on low-concentration populations of Alexandrium fundyense using PCR identification of ingested prey. Journal of Plankton Research 33:927-936


  1. Lesen A, Juhl AR, Anderson OR (2010). Heterotrophic microplankton in the lower Hudson River Estuary: potential importance of naked, planktonic amebas for bacterivory and carbon flux. Aquatic Microbial Ecology 61:45-56


  1. Juhl AR, Krembs C (2010). Effects of snow removal and algal photoacclimation on growth and export of ice algae. Polar Biology 33:1057-1065


  1. Eddie BJ**, Juhl AR, Krembs C, Baysinger C, Neuer S (2010). Effect of environmental variables on eukaryotic community structure of land-fast arctic sea ice. Environmental Microbiology 12:797-809


  1. Juhl AR, Martins CA** and Anderson DM (2008). Toxicity of Alexandrium lusitanicum to Gastropod Larvae is Not Caused by Paralytic-Shellfish-Poisoning Toxin. Harmful Algae 7:567-573


  1. Juhl AR and Murrell MC (2008). Nutrient Limitation of Phytoplankton Growth and Physiology in a Subtropical Estuary (Pensacola Bay, Florida). Bulletin of Marine Science 82:59-82


  1. Radloff KA**, Cheng Z, Rahman MW, Ahmed KM, Mailloux BJ, Juhl AR, Schlosser P, and Van Geen, A (2007). Mobilization of Arsenic During One-Year Incubations of Grey Aquifer Sands From Araihazar, Bangladesh. Environmental Science and Technology 41:3639-3645


  1. Juhl, AR, and Murrell MC (2005) Interactions Between Nutrients, Phytoplankton Growth, and Microzooplankton Grazing in a Gulf of Mexico Estuary. Aquatic Microbial Ecology 38:147-156


  1. Juhl AR (2005) Growth Rates and Elemental Composition of Alexandrium monilatum, a Red-Tide Dinoflagellate. Harmful Algae 4: 287-295


  1. Latz MI Juhl AR, Elghobashi SE, Ahmed AM, Rohr J (2004). Hydrodynamic stimulation of dinoflagellate bioluminescence: a computational and experimental study. Journal of Experimental Biology. 207: 1941-1951


  1. Talley DM and 13 others including Juhl AR (2003). Research Challenges at the Land/Sea Interface.  Estuarine and Coastal Shelf Science 58: 699-702


  1. Juhl AR, Latz MI (2002). Mechanisms of Fluid Shear-Induced Inhibition of Population Growth in a Red-Tide Dinoflagellate. Journal of Phycology 38: 683-694


  1. Juhl AR, Trainer V, Latz MI (2001). Effect of Fluid Shear and Light on Population Growth and Cellular Toxin Content of the Dinoflagellate Alexandrium fundyense. Limnology and Oceanography 46: 758-764


  1. Juhl AR, Velasquez V*, Latz MI (2000). Effect of Growth Conditions on Flow-Induced Inhibition of Population Growth of a Red-Tide Dinoflagellate.  Limnology and Oceanography 45: 905-915


  1. Krembs C, Juhl AR, Strickler JR (1998). The Spatial Information Preservation Method: Sampling the Nanoscale Distribution of Microorganisms.  Limnology and Oceanography 43: 298-306


  1. Krembs C, Juhl AR, Long RA, Azam F (1998). Nanoscale Patchiness of Bacteria in Lake Water Studied with the Spatial Information Preservation Method.  Limnology and Oceanography 43: 307-314


  1. Juhl AR, Ohman MD, Goericke R (1996). Astaxanthin in Calanus pacificus :  Assessment of Pigment-Based Measures of Omnivory.  Limnology and Oceanography 41: 1198-1207


  1. Juhl AR, Taghon G (1993). Biology of an Active Methane Seep on the Oregon Continental Shelf.  Marine Ecology Progress Series 102:287-294